Detailed information of SNP:
|
SNP ID:
sf0705334234(Gbrowse)
Chromosome: chr07 Position: 5334234 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1351 | 58.48% | 41.52% |
| All Indica | 783 | 96.55% | 3.45% |
| All Japonica | 497 | 0.40% | 99.60% |
| Aus | 17 | 88.24% | 11.76% |
| Indica I | 368 | 99.46% | 0.54% |
| Indica II | 211 | 89.57% | 10.43% |
| Indica Intermediate | 204 | 98.53% | 1.47% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 13 | 0.00% | 100.00% |
| Intermediate | 41 | 41.46% | 58.54% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0705334234 | C->T | INTERGENIC | None |