Detailed information of SNP:
|
SNP ID:
sf0705393647(Gbrowse)
Chromosome: chr07 Position: 5393647 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1279 | 58.17% | 41.83% |
| All Indica | 661 | 28.44% | 71.56% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 65 | 30.77% | 69.23% |
| Indica I | 302 | 23.18% | 76.82% |
| Indica II | 187 | 43.32% | 56.68% |
| Indica Intermediate | 172 | 21.51% | 78.49% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0705393647 | G->A | LOC_Os07g10080(LOC_Os07g10080.1) | INTRON |