Detailed information of SNP:
|
SNP ID:
sf0705437087(Gbrowse)
Chromosome: chr07 Position: 5437087 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1367 | 62.91% | 37.09% |
| All Indica | 797 | 99.00% | 1.00% |
| All Japonica | 497 | 7.04% | 92.96% |
| Aus | 20 | 80.00% | 20.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 211 | 97.63% | 2.37% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 8.66% | 91.34% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 13 | 0.00% | 100.00% |
| Intermediate | 40 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0705437087 | G->A | INTERGENIC | None |