Detailed information of SNP:
|
SNP ID:
sf0705460792(Gbrowse)
Chromosome: chr07 Position: 5460792 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1390 | 62.30% | 37.70% |
| All Indica | 770 | 34.03% | 65.97% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 361 | 26.04% | 73.96% |
| Indica II | 207 | 30.43% | 69.57% |
| Indica Intermediate | 202 | 51.98% | 48.02% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0705460792 | C->T | INTERGENIC | None |