Detailed information of SNP:
SNP ID:
sf0705472235(Gbrowse)
Chromosome: chr07 Position: 5472235 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
---|---|---|---|
All | 1419 | 64.34% | 35.66% |
All Indica | 799 | 99.00% | 1.00% |
All Japonica | 497 | 6.24% | 93.76% |
Aus | 67 | 98.51% | 1.49% |
Indica I | 375 | 99.73% | 0.27% |
Indica II | 213 | 97.65% | 2.35% |
Indica Intermediate | 211 | 99.05% | 0.95% |
Temperate Japonica | 335 | 8.36% | 91.64% |
Tropical Japonica | 94 | 1.06% | 98.94% |
Japonica Intermediate | 68 | 2.94% | 97.06% |
Group VI/Aromatic | 14 | 7.14% | 92.86% |
Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0705472235 | T->C | INTERGENIC | None |