Detailed information of SNP:



SNP ID: sf0705472235(Gbrowse)

Chromosome: chr07

Position: 5472235
Major allele: C

Minor allele: T

Reference allele: T

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1419 64.34% 35.66%
All Indica799 99.00% 1.00%
All Japonica497 6.24% 93.76%
Aus67 98.51% 1.49%
Indica I375 99.73% 0.27%
Indica II213 97.65% 2.35%
Indica Intermediate211 99.05% 0.95%
Temperate Japonica335 8.36% 91.64%
Tropical Japonica94 1.06% 98.94%
Japonica Intermediate68 2.94% 97.06%
Group VI/Aromatic14 7.14% 92.86%
Intermediate42 57.14% 42.86%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0705472235 T->C INTERGENIC None