Detailed information of SNP:
|
SNP ID:
sf0705478080(Gbrowse)
Chromosome: chr07 Position: 5478080 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1413 | 55.27% | 44.73% |
| All Indica | 793 | 94.58% | 5.42% |
| All Japonica | 497 | 0.40% | 99.60% |
| Aus | 67 | 16.42% | 83.58% |
| Indica I | 370 | 98.65% | 1.35% |
| Indica II | 212 | 87.74% | 12.26% |
| Indica Intermediate | 211 | 94.31% | 5.69% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 42.86% | 57.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0705478080 | G->A | INTERGENIC | None |