Detailed information of SNP:
|
SNP ID:
sf0705493007(Gbrowse)
Chromosome: chr07 Position: 5493007 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 63.06% | 36.94% |
| All Indica | 799 | 98.50% | 1.50% |
| All Japonica | 497 | 3.62% | 96.38% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 335 | 4.48% | 95.52% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 39 | 56.41% | 43.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0705493007 | A->G | INTERGENIC | None |