Detailed information of SNP:
|
SNP ID:
sf0705520103(Gbrowse)
Chromosome: chr07 Position: 5520103 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 55.82% | 44.18% |
| All Indica | 797 | 95.23% | 4.77% |
| All Japonica | 497 | 0.40% | 99.60% |
| Aus | 67 | 16.42% | 83.58% |
| Indica I | 375 | 98.13% | 1.87% |
| Indica II | 213 | 89.20% | 10.80% |
| Indica Intermediate | 209 | 96.17% | 3.83% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0705520103 | G->A | INTERGENIC | None |