Detailed information of SNP:
|
SNP ID:
sf0705526868(Gbrowse)
Chromosome: chr07 Position: 5526868 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 60.93% | 39.07% |
| All Indica | 798 | 95.99% | 4.01% |
| All Japonica | 497 | 3.42% | 96.58% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 375 | 96.53% | 3.47% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 210 | 95.71% | 4.29% |
| Temperate Japonica | 335 | 4.18% | 95.82% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0705526868 | A->G | INTERGENIC | None |