Detailed information of SNP:
|
SNP ID:
sf0705559235(Gbrowse)
Chromosome: chr07 Position: 5559235 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1368 | 60.38% | 39.62% |
| All Indica | 798 | 98.62% | 1.38% |
| All Japonica | 497 | 0.40% | 99.60% |
| Aus | 22 | 63.64% | 36.36% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 212 | 97.64% | 2.36% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 13 | 0.00% | 100.00% |
| Intermediate | 38 | 60.53% | 39.47% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0705559235 | T->C | INTERGENIC | None |