Detailed information of SNP:
|
SNP ID:
sf0705622946(Gbrowse)
Chromosome: chr07 Position: 5622946 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1409 | 66.15% | 33.85% |
| All Indica | 799 | 99.00% | 1.00% |
| All Japonica | 491 | 11.20% | 88.80% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 330 | 4.55% | 95.45% |
| Tropical Japonica | 94 | 37.23% | 62.77% |
| Japonica Intermediate | 67 | 7.46% | 92.54% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 38 | 65.79% | 34.21% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0705622946 | A->C | INTERGENIC | None |