Detailed information of SNP:
|
SNP ID:
sf0705672480(Gbrowse)
Chromosome: chr07 Position: 5672480 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1413 | 99.50% | 0.50% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 491 | 98.57% | 1.43% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 330 | 99.70% | 0.30% |
| Tropical Japonica | 93 | 93.55% | 6.45% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0705672480 | T->C | INTERGENIC | None |