Detailed information of SNP:
|
SNP ID:
sf0705691539(Gbrowse)
Chromosome: chr07 Position: 5691539 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 78.44% | 21.56% |
| All Indica | 799 | 70.09% | 29.91% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 10.45% | 89.55% |
| Indica I | 375 | 74.13% | 25.87% |
| Indica II | 213 | 79.81% | 20.19% |
| Indica Intermediate | 211 | 53.08% | 46.92% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0705691539 | A->G | LOC_Os07g10540(LOC_Os07g10540.2) | INTRON |
| sf0705691539 | A->G | LOC_Os07g10540(LOC_Os07g10540.1) | INTRON |