Detailed information of SNP:
|
SNP ID:
sf0705700934(Gbrowse)
Chromosome: chr07 Position: 5700934 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 79.67% | 20.33% |
| All Indica | 795 | 71.57% | 28.43% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 64 | 14.06% | 85.94% |
| Indica I | 374 | 75.67% | 24.33% |
| Indica II | 212 | 81.13% | 18.87% |
| Indica Intermediate | 209 | 54.55% | 45.45% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0705700934 | C->T | INTERGENIC | None |