Detailed information of SNP:
|
SNP ID:
sf0705701783(Gbrowse)
Chromosome: chr07 Position: 5701783 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 95.90% | 4.10% |
| All Indica | 796 | 96.73% | 3.27% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 66 | 54.55% | 45.45% |
| Indica I | 375 | 98.40% | 1.60% |
| Indica II | 212 | 97.64% | 2.36% |
| Indica Intermediate | 209 | 92.82% | 7.18% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0705701783 | G->T | INTERGENIC | None |