Detailed information of SNP:
|
SNP ID:
sf0705750438(Gbrowse)
Chromosome: chr07 Position: 5750438 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1398 | 80.04% | 19.96% |
| All Indica | 787 | 72.55% | 27.45% |
| All Japonica | 489 | 100.00% | 0.00% |
| Aus | 67 | 16.42% | 83.58% |
| Indica I | 371 | 75.74% | 24.26% |
| Indica II | 205 | 80.00% | 20.00% |
| Indica Intermediate | 211 | 59.72% | 40.28% |
| Temperate Japonica | 330 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 66 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 85.37% | 14.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0705750438 | G->T | LOC_Os07g10600(LOC_Os07g10600.1) | INTRON |
| sf0705750438 | G->T | LOC_Os07g10600(LOC_Os07g10600.2) | INTRON |