Detailed information of SNP:
|
SNP ID:
sf0705757058(Gbrowse)
Chromosome: chr07 Position: 5757058 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1332 | 61.64% | 38.36% |
| All Indica | 717 | 33.05% | 66.95% |
| All Japonica | 497 | 97.38% | 2.62% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 333 | 29.13% | 70.87% |
| Indica II | 187 | 24.60% | 75.40% |
| Indica Intermediate | 197 | 47.72% | 52.28% |
| Temperate Japonica | 335 | 97.61% | 2.39% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 37 | 59.46% | 40.54% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0705757058 | G->A | INTERGENIC | None |