Detailed information of SNP:
|
SNP ID:
sf0705939928(Gbrowse)
Chromosome: chr07 Position: 5939928 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1371 | 97.67% | 2.33% |
| All Indica | 797 | 100.00% | 0.00% |
| All Japonica | 452 | 94.91% | 5.09% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 100.00% | 0.00% |
| Temperate Japonica | 304 | 98.68% | 1.32% |
| Tropical Japonica | 86 | 91.86% | 8.14% |
| Japonica Intermediate | 62 | 80.65% | 19.35% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0705939928 | G->T | INTERGENIC | None |