Detailed information of SNP:
|
SNP ID:
sf0705962720(Gbrowse)
Chromosome: chr07 Position: 5962720 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1255 | 97.13% | 2.87% |
| All Indica | 794 | 100.00% | 0.00% |
| All Japonica | 345 | 93.33% | 6.67% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 100.00% | 0.00% |
| Indica II | 211 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 100.00% | 0.00% |
| Temperate Japonica | 232 | 97.84% | 2.16% |
| Tropical Japonica | 66 | 83.33% | 16.67% |
| Japonica Intermediate | 47 | 85.11% | 14.89% |
| Group VI/Aromatic | 13 | 7.69% | 92.31% |
| Intermediate | 36 | 97.22% | 2.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0705962720 | G->A | INTERGENIC | None |