Detailed information of SNP:
|
SNP ID:
sf0706069367(Gbrowse)
Chromosome: chr07 Position: 6069367 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 84.12% | 15.88% |
| All Indica | 797 | 80.43% | 19.57% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 11.94% | 88.06% |
| Indica I | 373 | 73.19% | 26.81% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 75.83% | 24.17% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0706069367 | A->T | INTERGENIC | None |