Detailed information of SNP:
|
SNP ID:
sf0706077198(Gbrowse)
Chromosome: chr07 Position: 6077198 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1408 | 88.28% | 11.72% |
| All Indica | 796 | 80.53% | 19.47% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 59 | 93.22% | 6.78% |
| Indica I | 375 | 72.00% | 28.00% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 208 | 76.92% | 23.08% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0706077198 | C->G | INTERGENIC | None |