Detailed information of SNP:
|
SNP ID:
sf0706123767(Gbrowse)
Chromosome: chr07 Position: 6123767 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 85.12% | 14.88% |
| All Indica | 799 | 81.10% | 18.90% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 66 | 22.73% | 77.27% |
| Indica I | 375 | 73.60% | 26.40% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 76.78% | 23.22% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0706123767 | T->C | INTERGENIC | None |