Detailed information of SNP:



SNP ID: sf0706125993(Gbrowse)

Chromosome: chr07

Position: 6125993
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1419 99.58% 0.42%
All Indica799 100.00% 0.00%
All Japonica497 98.79% 1.21%
Aus67 100.00% 0.00%
Indica I375 100.00% 0.00%
Indica II213 100.00% 0.00%
Indica Intermediate211 100.00% 0.00%
Temperate Japonica335 99.70% 0.30%
Tropical Japonica94 94.68% 5.32%
Japonica Intermediate68 100.00% 0.00%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 100.00% 0.00%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0706125993 C->T LOC_Os07g11080(LOC_Os07g11080.1) INTRON