Detailed information of SNP:
|
SNP ID:
sf0706126236(Gbrowse)
Chromosome: chr07 Position: 6126236 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1405 | 85.62% | 14.38% |
| All Indica | 792 | 81.06% | 18.94% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 60 | 30.00% | 70.00% |
| Indica I | 369 | 74.53% | 25.47% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 210 | 74.76% | 25.24% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0706126236 | C->T | LOC_Os07g11080(LOC_Os07g11080.1) | INTRON |