Detailed information of SNP:
|
SNP ID:
sf0706130396(Gbrowse)
Chromosome: chr07 Position: 6130396 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 91.47% | 8.53% |
| All Indica | 799 | 92.87% | 7.13% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 19.40% | 80.60% |
| Indica I | 375 | 92.27% | 7.73% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 88.63% | 11.37% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0706130396 | T->A | INTERGENIC | None |