Detailed information of SNP:
|
SNP ID:
sf0706161757(Gbrowse)
Chromosome: chr07 Position: 6161757 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1412 | 97.24% | 2.76% |
| All Indica | 798 | 99.62% | 0.38% |
| All Japonica | 496 | 93.35% | 6.65% |
| Aus | 62 | 98.39% | 1.61% |
| Indica I | 374 | 100.00% | 0.00% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 93 | 66.67% | 33.33% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0706161757 | G->A | LOC_Os07g11180(LOC_Os07g11180.1) | Synonymous |