Detailed information of SNP:
|
SNP ID:
sf0706184605(Gbrowse)
Chromosome: chr07 Position: 6184605 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 83.58% | 16.42% |
| All Indica | 799 | 81.10% | 18.90% |
| All Japonica | 497 | 85.31% | 14.69% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 74.13% | 25.87% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 76.30% | 23.70% |
| Temperate Japonica | 335 | 86.87% | 13.13% |
| Tropical Japonica | 94 | 76.60% | 23.40% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0706184605 | A->T | INTERGENIC | None |