Detailed information of SNP:
|
SNP ID:
sf0706188187(Gbrowse)
Chromosome: chr07 Position: 6188187 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1404 | 90.38% | 9.62% |
| All Indica | 785 | 84.59% | 15.41% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 66 | 86.36% | 13.64% |
| Indica I | 366 | 79.51% | 20.49% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 206 | 80.10% | 19.90% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0706188187 | G->A | LOC_Os07g11240(LOC_Os07g11240.1) | Non-Synonymous SNP |