Detailed information of SNP:
|
SNP ID:
sf0706190494(Gbrowse)
Chromosome: chr07 Position: 6190494 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1389 | 86.83% | 13.17% |
| All Indica | 786 | 96.82% | 3.18% |
| All Japonica | 491 | 70.88% | 29.12% |
| Aus | 58 | 89.66% | 10.34% |
| Indica I | 369 | 96.21% | 3.79% |
| Indica II | 211 | 96.68% | 3.32% |
| Indica Intermediate | 206 | 98.06% | 1.94% |
| Temperate Japonica | 331 | 67.37% | 32.63% |
| Tropical Japonica | 93 | 90.32% | 9.68% |
| Japonica Intermediate | 67 | 61.19% | 38.81% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 77.50% | 22.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0706190494 | T->C | LOC_Os07g11240(LOC_Os07g11240.1) | Synonymous |