Detailed information of SNP:
|
SNP ID:
sf0706191931(Gbrowse)
Chromosome: chr07 Position: 6191931 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 85.02% | 14.98% |
| All Indica | 799 | 81.73% | 18.27% |
| All Japonica | 493 | 88.44% | 11.56% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 74.93% | 25.07% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 76.78% | 23.22% |
| Temperate Japonica | 331 | 91.54% | 8.46% |
| Tropical Japonica | 94 | 76.60% | 23.40% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0706191931 | G->A | LOC_Os07g11240(LOC_Os07g11240.1) | INTRON |