Detailed information of SNP:
|
SNP ID:
sf0706193044(Gbrowse)
Chromosome: chr07 Position: 6193044 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1412 | 89.31% | 10.69% |
| All Indica | 796 | 98.62% | 1.38% |
| All Japonica | 495 | 73.74% | 26.26% |
| Aus | 65 | 95.38% | 4.62% |
| Indica I | 374 | 98.93% | 1.07% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 209 | 98.56% | 1.44% |
| Temperate Japonica | 334 | 71.26% | 28.74% |
| Tropical Japonica | 94 | 91.49% | 8.51% |
| Japonica Intermediate | 67 | 61.19% | 38.81% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0706193044 | A->G | LOC_Os07g11240(LOC_Os07g11240.1) | Non-Synonymous SNP |