Detailed information of SNP:
|
SNP ID:
sf0706208944(Gbrowse)
Chromosome: chr07 Position: 6208944 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1412 | 97.66% | 2.34% |
| All Indica | 793 | 99.62% | 0.38% |
| All Japonica | 496 | 94.15% | 5.85% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 371 | 100.00% | 0.00% |
| Indica II | 211 | 98.58% | 1.42% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 334 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 71.28% | 28.72% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0706208944 | G->A | LOC_Os07g11260(LOC_Os07g11260.1) | Synonymous |