Detailed information of SNP:
|
SNP ID:
sf0706212472(Gbrowse)
Chromosome: chr07 Position: 6212472 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 80.39% | 19.61% |
| All Indica | 798 | 73.81% | 26.19% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 16.42% | 83.58% |
| Indica I | 374 | 67.65% | 32.35% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 211 | 63.03% | 36.97% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0706212472 | T->C | LOC_Os07g11270(LOC_Os07g11270.1) | Non-Synonymous SNP |