Detailed information of SNP:
|
SNP ID:
sf0706214719(Gbrowse)
Chromosome: chr07 Position: 6214719 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1412 | 85.84% | 14.16% |
| All Indica | 794 | 77.58% | 22.42% |
| All Japonica | 497 | 98.39% | 1.61% |
| Aus | 65 | 92.31% | 7.69% |
| Indica I | 372 | 70.70% | 29.30% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 209 | 73.68% | 26.32% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0706214719 | T->G | INTERGENIC | None |