Detailed information of SNP:
|
SNP ID:
sf0706244345(Gbrowse)
Chromosome: chr07 Position: 6244345 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 73.27% | 26.73% |
| All Indica | 799 | 76.22% | 23.78% |
| All Japonica | 496 | 75.00% | 25.00% |
| Aus | 67 | 16.42% | 83.58% |
| Indica I | 375 | 70.67% | 29.33% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 211 | 64.93% | 35.07% |
| Temperate Japonica | 334 | 62.87% | 37.13% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0706244345 | T->C | INTERGENIC | None |