Detailed information of SNP:
|
SNP ID:
sf0706268310(Gbrowse)
Chromosome: chr07 Position: 6268310 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1395 | 90.54% | 9.46% |
| All Indica | 798 | 98.62% | 1.38% |
| All Japonica | 474 | 75.74% | 24.26% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 212 | 98.58% | 1.42% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 323 | 73.68% | 26.32% |
| Tropical Japonica | 88 | 96.59% | 3.41% |
| Japonica Intermediate | 63 | 57.14% | 42.86% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0706268310 | T->C | LOC_Os07g11400(LOC_Os07g11400.1) | Non-Synonymous SNP |