Detailed information of SNP:
|
SNP ID:
sf0706281475(Gbrowse)
Chromosome: chr07 Position: 6281475 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 85.40% | 14.60% |
| All Indica | 798 | 80.08% | 19.92% |
| All Japonica | 497 | 93.76% | 6.24% |
| Aus | 67 | 83.58% | 16.42% |
| Indica I | 375 | 73.33% | 26.67% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 210 | 74.76% | 25.24% |
| Temperate Japonica | 335 | 90.75% | 9.25% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0706281475 | G->A | INTERGENIC | None |