Detailed information of SNP:
|
SNP ID:
sf0706283150(Gbrowse)
Chromosome: chr07 Position: 6283150 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1379 | 92.60% | 7.40% |
| All Indica | 796 | 99.87% | 0.13% |
| All Japonica | 463 | 79.27% | 20.73% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 99.53% | 0.47% |
| Indica Intermediate | 209 | 100.00% | 0.00% |
| Temperate Japonica | 311 | 77.17% | 22.83% |
| Tropical Japonica | 91 | 93.41% | 6.59% |
| Japonica Intermediate | 61 | 68.85% | 31.15% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 87.50% | 12.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0706283150 | A->G | LOC_Os07g11420(LOC_Os07g11420.1) | INTRON |