Detailed information of SNP:
|
SNP ID:
sf0706299850(Gbrowse)
Chromosome: chr07 Position: 6299850 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1404 | 96.01% | 3.99% |
| All Indica | 797 | 99.62% | 0.38% |
| All Japonica | 484 | 89.67% | 10.33% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 98.58% | 1.42% |
| Indica Intermediate | 210 | 100.00% | 0.00% |
| Temperate Japonica | 330 | 99.39% | 0.61% |
| Tropical Japonica | 87 | 48.28% | 51.72% |
| Japonica Intermediate | 67 | 95.52% | 4.48% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0706299850 | G->A | LOC_Os07g11450(LOC_Os07g11450.1) | Synonymous |