Detailed information of SNP:
|
SNP ID:
sf0706318444(Gbrowse)
Chromosome: chr07 Position: 6318444 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1389 | 93.88% | 6.12% |
| All Indica | 797 | 100.00% | 0.00% |
| All Japonica | 471 | 83.23% | 16.77% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 100.00% | 0.00% |
| Temperate Japonica | 316 | 81.96% | 18.04% |
| Tropical Japonica | 92 | 95.65% | 4.35% |
| Japonica Intermediate | 63 | 71.43% | 28.57% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0706318444 | C->T | INTERGENIC | None |