Detailed information of SNP:
|
SNP ID:
sf0706377901(Gbrowse)
Chromosome: chr07 Position: 6377901 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1399 | 91.64% | 8.36% |
| All Indica | 797 | 99.75% | 0.25% |
| All Japonica | 480 | 77.08% | 22.92% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 209 | 100.00% | 0.00% |
| Temperate Japonica | 321 | 72.90% | 27.10% |
| Tropical Japonica | 93 | 94.62% | 5.38% |
| Japonica Intermediate | 66 | 72.73% | 27.27% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0706377901 | C->T | INTERGENIC | None |