Detailed information of SNP:
|
SNP ID:
sf0706399049(Gbrowse)
Chromosome: chr07 Position: 6399049 |
Major allele:
C
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1414 | 83.73% | 16.27% |
| All Indica | 798 | 99.50% | 0.50% |
| All Japonica | 494 | 59.31% | 40.69% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 332 | 61.14% | 38.86% |
| Tropical Japonica | 94 | 82.98% | 17.02% |
| Japonica Intermediate | 68 | 17.65% | 82.35% |
| Group VI/Aromatic | 13 | 15.38% | 84.62% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0706399049 | G->C | INTERGENIC | None |