Detailed information of SNP:
|
SNP ID:
sf0706404265(Gbrowse)
Chromosome: chr07 Position: 6404265 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1392 | 93.32% | 6.68% |
| All Indica | 777 | 91.25% | 8.75% |
| All Japonica | 495 | 98.99% | 1.01% |
| Aus | 65 | 75.38% | 24.62% |
| Indica I | 362 | 88.67% | 11.33% |
| Indica II | 212 | 94.81% | 5.19% |
| Indica Intermediate | 203 | 92.12% | 7.88% |
| Temperate Japonica | 333 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0706404265 | C->T | INTERGENIC | None |