Detailed information of SNP:
|
SNP ID:
sf0706439815(Gbrowse)
Chromosome: chr07 Position: 6439815 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 94.13% | 5.87% |
| All Indica | 798 | 99.75% | 0.25% |
| All Japonica | 494 | 87.45% | 12.55% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 99.05% | 0.95% |
| Temperate Japonica | 333 | 93.69% | 6.31% |
| Tropical Japonica | 94 | 90.43% | 9.57% |
| Japonica Intermediate | 67 | 52.24% | 47.76% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0706439815 | G->A | INTERGENIC | None |