Detailed information of SNP:
|
SNP ID:
sf0706452763(Gbrowse)
Chromosome: chr07 Position: 6452763 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1407 | 95.17% | 4.83% |
| All Indica | 799 | 99.75% | 0.25% |
| All Japonica | 491 | 89.21% | 10.79% |
| Aus | 65 | 96.92% | 3.08% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 332 | 94.28% | 5.72% |
| Tropical Japonica | 93 | 91.40% | 8.60% |
| Japonica Intermediate | 66 | 60.61% | 39.39% |
| Group VI/Aromatic | 13 | 23.08% | 76.92% |
| Intermediate | 39 | 97.44% | 2.56% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0706452763 | G->A | LOC_Os07g11670(LOC_Os07g11670.1) | Non-Synonymous SNP |