Detailed information of SNP:
|
SNP ID:
sf0706501757(Gbrowse)
Chromosome: chr07 Position: 6501757 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1404 | 58.76% | 41.24% |
| All Indica | 787 | 93.90% | 6.10% |
| All Japonica | 495 | 2.22% | 97.78% |
| Aus | 66 | 81.82% | 18.18% |
| Indica I | 371 | 95.15% | 4.85% |
| Indica II | 207 | 91.30% | 8.70% |
| Indica Intermediate | 209 | 94.26% | 5.74% |
| Temperate Japonica | 333 | 2.40% | 97.60% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0706501757 | T->C | LOC_Os07g11770(LOC_Os07g11770.1) | UTR_5_PRIME |