Detailed information of SNP:
|
SNP ID:
sf0706506304(Gbrowse)
Chromosome: chr07 Position: 6506304 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1396 | 56.52% | 43.48% |
| All Indica | 782 | 90.54% | 9.46% |
| All Japonica | 493 | 1.22% | 98.78% |
| Aus | 66 | 86.36% | 13.64% |
| Indica I | 367 | 93.73% | 6.27% |
| Indica II | 207 | 85.99% | 14.01% |
| Indica Intermediate | 208 | 89.42% | 10.58% |
| Temperate Japonica | 331 | 1.21% | 98.79% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 41 | 39.02% | 60.98% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0706506304 | A->T | INTERGENIC | None |