Detailed information of SNP:
|
SNP ID:
sf0706509512(Gbrowse)
Chromosome: chr07 Position: 6509512 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1392 | 54.45% | 45.55% |
| All Indica | 779 | 87.29% | 12.71% |
| All Japonica | 493 | 1.42% | 98.58% |
| Aus | 64 | 87.50% | 12.50% |
| Indica I | 365 | 89.86% | 10.14% |
| Indica II | 211 | 83.41% | 16.59% |
| Indica Intermediate | 203 | 86.70% | 13.30% |
| Temperate Japonica | 332 | 1.81% | 98.19% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 67 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 33.33% | 66.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0706509512 | T->G | INTERGENIC | None |