Detailed information of SNP:
|
SNP ID:
sf0706512093(Gbrowse)
Chromosome: chr07 Position: 6512093 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1387 | 57.03% | 42.97% |
| All Indica | 773 | 31.05% | 68.95% |
| All Japonica | 495 | 99.39% | 0.61% |
| Aus | 64 | 25.00% | 75.00% |
| Indica I | 361 | 30.47% | 69.53% |
| Indica II | 210 | 31.90% | 68.10% |
| Indica Intermediate | 202 | 31.19% | 68.81% |
| Temperate Japonica | 333 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 75.61% | 24.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0706512093 | T->C | INTERGENIC | None |