Detailed information of SNP:
|
SNP ID:
sf0706527885(Gbrowse)
Chromosome: chr07 Position: 6527885 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1409 | 97.45% | 2.55% |
| All Indica | 791 | 95.45% | 4.55% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 374 | 95.19% | 4.81% |
| Indica II | 210 | 95.24% | 4.76% |
| Indica Intermediate | 207 | 96.14% | 3.86% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0706527885 | G->A | LOC_Os07g11800(LOC_Os07g11800.1) | Non-Synonymous SNP |